The Basic Education Unit is composed of the Grade School, Junior High School and Senior High School. All three are located in the Loyola Heights campus in Quezon City.
The Loyola Schools is the tertiary level school unit of the Ateneo de Manila University that offers undergraduate and graduate degree programs in the Arts and Sciences. It is composed of the School of Humanities, the John Gokongwei School of Management, the School of Science and Engineering, and the School of Social Sciences. Each undergraduate has a home base in a particular school. Still, most preserve the diverse spectrum of interests that helped them get into Ateneo in the first place, using electives to round out their studies.
- School of Humanities (SOH)
- School of Social Sciences (SOSS)
- School of Science and Engineering (SOSE)
- John Gokongwei School of Management (JGSOM)
The Ateneo Professional Schools is the post graduate unit of the Ateneo de Manila University. It is composed of the Ateneo Graduate School of Business, the Ateneo School of Medicine and Public Health, the Ateneo Law School, and the Ateneo School of Government.
- Ateneo Graduate School of Business,
- Ateneo School of Medicine and Public Health
- Ateneo Law School
- Ateneo School of Government